Différences

Ci-dessous, les différences entre deux révisions de la page.

--- teaching:progappchim:bioinformatic [2019/03/21 13:45] – [Compter les nucléotides d'une séquence ADN] villersd
+++ teaching:progappchim:bioinformatic [2020/03/27 11:55] – villersd
@@ Ligne 92: / Ligne 92: @@
 + lecture de fichier
-<sxh python; title : Finding_a_Protein_Motif-01.py>
+<code python Finding_a_Protein_Motif-01.py>
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
@@ Ligne 124: / Ligne 124: @@
     "GGU":"G", "GGC":"G", "GGA":"G", "GGG":"G",}
-aminoacids = ''.join(sorted(list(set([v for k,v in dic.items() if v <> "STOP"]))))
+aminoacids = ''.join(sorted(list(set([v for k,v in dic.items() if v != "STOP"]))))
-print aminoacids
+print(aminoacids)
 # UniProt Protein Database access IDs
@@ Ligne 133: / Ligne 133: @@
 seq_record = SeqIO.read(handle, "swiss")
 handle.close()
-print
+print()
-print seq_record
+print(seq_record)
-</sxh>
+</code>
 ===== Références =====
@@ Ligne 151: / Ligne 151: @@
     * [[http://www.uniprot.org/help/programmatic_access#id_mapping_python_example]]
     * [[http://www.python-simple.com/python-biopython/Lecture-ecriture-sequences.php]]
+  * Articles de la revue "Science in School" :
+    * [[https://www.scienceinschool.org/2010/issue17/bioinformatics|Bioinformatics with pen and paper: building a phylogenetic tree]] Cleopatra Kozlowski, 07/12/2010
+    * [[https://www.scienceinschool.org/2014/issue29/online_bioinf|Using biological databases to teach evolution and biochemistry]], Germán Tenorio, 02/06/2014
+  * documentation sur les arbres phylogénétiques : [[https://biopython.org/wiki/Phylo]]
+  * cours introductif sur biopython :
+    * [[https://www.bits.vib.be/component/content/article?id=176:biopython|Introduction to Biopython]] VIB bioinformatics core, Kristian Rother