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teaching:methcalchim:start [2021/05/21 10:05] – villersd | teaching:methcalchim:start [2022/03/25 09:33] – [References] villersd |
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* Agent base modelling and complex systems | * Agent base modelling and complex systems |
* cellular automaton | * cellular automaton |
* Simpy,... | * Simpy, active matter simulations... |
* Digital image processing, image recognition | * Digital image processing, image recognition |
* particle tracking,... | * particle tracking,... |
* Gradient descent optimization | * Gradient descent optimization |
* [[https://machinelearningmastery.com/gradient-descent-optimization-from-scratch/|How to Implement Gradient Descent Optimization from Scratch]] By Jason Brownlee on April 16, 2021 | * [[https://machinelearningmastery.com/gradient-descent-optimization-from-scratch/|How to Implement Gradient Descent Optimization from Scratch]] By Jason Brownlee on April 16, 2021 |
| * [[https://towardsdatascience.com/implementing-gradient-descent-in-python-from-scratch-760a8556c31f|Implementing Gradient Descent in Python from Scratch]] Vatsal Sheth, Medium, 18/02/2022 |
* Bioinformatics | * Bioinformatics |
* [[http://biopython.org/|Biopython]] | * [[http://biopython.org/|Biopython]] |
* K-Means | * K-Means |
* [[http://benalexkeen.com/k-means-clustering-in-python/|K-means Clustering in Python]] | * [[http://benalexkeen.com/k-means-clustering-in-python/|K-means Clustering in Python]] |
| * [[https://medium.com/thrive-in-ai/k-means-clustering-in-python-9f00b3d7abc3|K Means Clustering in Python]] Rohit Raj, Medium, 02/03/2022 |
| * [[https://medium.com/thrive-in-ai/classification-algorithms-in-python-5f58a7a27b88|Classification Algorithms in Python]] Rohit Raj, Medium, 15/03/2022 |
* Applications (suggestions, examples,...) | * Applications (suggestions, examples,...) |
* [[https://scicomp.stackexchange.com/questions/28195/2d-ising-model-in-python|2D Ising Model in Python]] | * [[https://scicomp.stackexchange.com/questions/28195/2d-ising-model-in-python|2D Ising Model in Python]] |
* misc docs : | * misc docs : |
* [[https://pdfs.semanticscholar.org/3161/89e419212794e74bf83442f65de96b5320ba.pdf|Extraction of chemical structures and reactions from the literature]] | * [[https://pdfs.semanticscholar.org/3161/89e419212794e74bf83442f65de96b5320ba.pdf|Extraction of chemical structures and reactions from the literature]] |
| * [[https://medium.com/nerd-for-tech/animating-schrodinger-wave-function-%CF%88-of-a-particle-using-python-with-full-code-5ad9e4852906|Animating Schrodinger Wave Function(ψ) of a Particle Using Python (with full code) - Solving Particle in a Box Using Crank-Nicolson Method]], Kowshik chilamkurthy, Medium, 02/03/2021 |
* Blog articles | * Blog articles |
* [[https://py.plainenglish.io/linear-regression-in-plain-python-3b20bb56b31d|Simple Linear Regression Explained With Python - Explained in details which are easy to understand]] Arjan de Haan, Medium, Jan 23 (+ [[https://github.com/Vepnar/Script-Collection/blob/master/linear-regression/Linear%20regression.ipynb|jupyter notebook]]) | * [[https://py.plainenglish.io/linear-regression-in-plain-python-3b20bb56b31d|Simple Linear Regression Explained With Python - Explained in details which are easy to understand]] Arjan de Haan, Medium, Jan 23 (+ [[https://github.com/Vepnar/Script-Collection/blob/master/linear-regression/Linear%20regression.ipynb|jupyter notebook]]) |
* simpy : [[https://towardsdatascience.com/simulate-real-life-events-in-python-using-simpy-e6d9152a102f|Simulate Real-life Events in Python Using SimPy]] by Khuyen Tran, May, 2021, Medium, Towards Data Science | * simpy : [[https://towardsdatascience.com/simulate-real-life-events-in-python-using-simpy-e6d9152a102f|Simulate Real-life Events in Python Using SimPy]] by Khuyen Tran, May, 2021, Medium, Towards Data Science |
| * Active matter simulations ([[https://arxiv.org/pdf/cond-mat/0611743.pdf|Vicsek]], 1995) : |
| * [[https://medium.com/swlh/create-your-own-active-matter-simulation-with-python-76fce4a53b6f|Create Your Own Active Matter Simulation (With Python)]] Philip Mocz, The Startup, Medium 2021 + [[https://github.com/pmocz/activematter-python]] |
| * Fourier transforms : [[https://towardsdatascience.com/fourier-transforms-an-intuitive-visualisation-ba186c7380ee|Fourier Transforms: An Intuitive Visualisation - An intuitive visualization of discrete Fourier transforms applied to simple time-series data]] Diego Unzueta, Towards Data Science, Medium, 17/09/2021 |
| * Monte-Carlo simulations : [[Monte Carlo Simulation — a practical guide - A versatile method for parameters estimation. Exemplary implementation in Python programming language]] Robert Kwiatkowski, Medium, 31/01/2022 |
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* [[https://medium.com/swlh/building-linear-regression-in-python-75a429b0d3ba|Building Linear Regression in Python]] | * [[https://medium.com/swlh/building-linear-regression-in-python-75a429b0d3ba|Building Linear Regression in Python]] |
* [[https://towardsdatascience.com/17-types-of-similarity-and-dissimilarity-measures-used-in-data-science-3eb914d2681|17 types of similarity and dissimilarity measures used in data science]] : explains various methods for computing distances and showing their instances in our daily lives. Additionally, it will introduce you to the pydist2 package. Mahmoud Harmouch, Medium, 14/03/2021 | * [[https://towardsdatascience.com/17-types-of-similarity-and-dissimilarity-measures-used-in-data-science-3eb914d2681|17 types of similarity and dissimilarity measures used in data science]] : explains various methods for computing distances and showing their instances in our daily lives. Additionally, it will introduce you to the pydist2 package. Mahmoud Harmouch, Medium, 14/03/2021 |
| * [[http://jakevdp.github.io/|Pythonic Perambulations]] de Jake VanderPlas |
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